I don't change the media, I just put more in once the level gets down to around 2 inches from the bottom of the first column. I just refill the primary chamber, allow the reactor to sort out flow for a day, then measure the effluent for Ca and alk concentrations and measure
flow rate and adjust accordingly. It is always a good time to test your pH controller probes with borax and to clean out the effluent control valve seat with vinegar. Recheck tank levels in 5 days, then again in 5 more days to see if there are any trends out of the usual.
Eventually your 2nd column will require recharging with aragonite media as well, I like to make sure the second column is at least 3/4ths full.
HTH