If your structure is sound and your corals are all glued down you should be okay as far as toppling goes. I would put a lot of large rubble that forms caves near the bottom and they should be happy.
If you have any brittle staghorn like corals (
montipora digitata for instance) you will have occasional breakage when the eels swim into and through the coral.
As long as they have ample room to hide in the rocks it should be fine, you'll know pretty quickly as they will do a lot of moving around when they aren't happy with where they are. I've always kept eels, mainly snowflakes, in tanks with less than 1" of substrate so they can't dig and blow it everywhere. I just substitute sand/gravel with good rock cover for them to hide in.