If the diatoms don't go away, get a bristlenose pleco, they will clean it right up for you. I just use regular tap water, and add a dechlorinator. My tap water comes out 7.2, so I have to add a home made buffer receipe, that consists of instant ocean, baking soda, and
epsom salt.
The only concern I would have about using the RO waste water is if you are keeping africans that are sensitive to water quality.
When I was keeping a colony of Tropheus moorii, I would use RO/DI water and mix in my homemade buffer for water changes. Pretty much just like you would prepare water for your reef tank.
HTH